Chimera Commands Index
Usage:
viewdock dock-file [dock-type]
The viewdock command starts
ViewDock
and loads the specified file of docking results (dock-file).
Possible dock-type settings are:
- Dock 4, 5 or 6 (default)
- from recent versions of
DOCK
- Dock 3.5.x search
- search mode results from the variant developed in the
Shoichet laboratory
- Dock 3.5.x single
- single mode results from the variant developed in the
Shoichet laboratory
- Dock 3 or 3.5
- from older versions of
DOCK
- AutoDock
- PDBQT (Protein Data Bank with partial charge Q and atom type T) format from
AutoDock or
AutoDock Vina
(atomic partial charges and AutoDock4 atom types are assigned as the
attributes
charge and autodockType); see also the Chimera
AutoDock Vina interface
- Maestro/Glide
- .mae file from
Glide
- GOLD
- from GOLD
- Mordor
- from
MORDOR,
MOlecular Recognition with a Driven dynamics OptimizeR
Any argument containing a space, including dock-type,
should be enclosed in quotation marks. Example:
viewdock ../docking/test_single.eel1 "Dock 3.5.x single"
See also: cd,
ViewDock