Swapna replaces every residue with at least one atom in atom-spec with a new_type residue. New_type is a one-letter code representing one of the standard nucleic acid bases: A, T, G, C, or U (case is unimportant). The geometries of the new residues may not be optimal.
The temperature factor for the new residue is set to the highest currently found in the model.
See also: swapaa